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Revision 2 as of 2020-04-14 10:12:44

Contents

  1. Submitting jobs

Submitting jobs

Whatever you read here may need to be adjusted to fit your specific case. Do not hesitate to ask for some help wen needed.

Example of batch script

   1 #!/bin/bash
   2 
   3 #SBATCH -J test               # Job name
   4 #SBATCH -o /work/<<UID>>/job.%j.out   # Name of stdout output file (%j expands to jobId)
   5 #SBATCH -N 1                  # Total number of nodes requested
   6 #SBATCH -n 16                 # Total number of mpi tasks requested
   7 #SBATCH -t 01:30:00           # Run time (hh:mm:ss) - 1.5 hours
   8 
   9 # Load your software/command
  10 module load CMD
  11 
  12 # Run your command
  13 CMD [OPTIONS] ARGUMENTS