work in progress



    #!/bin/bash
    #SBATCH -J GTDB-Tk               # Job name
    #SBATCH -o /work/<<UID>>/job.%j.out   # Name of stdout output file (%j expands to jobId)
    #SBATCH -e /work/<<UID>>/job.%j.err   # Name of stderr output file (%j expands to jobId)
    #SBATCH -n 16                 # Total number of threads requested or total number of mpi tasks
    #SBATCH --mem=32000           # Maximum amount of memory in Mb the job can use
    #SBATCH -t 02:00:00           # Run time ([d-]hh:mm:ss) - 1.5 hours
    #SBATCH --mail-type=ALL
    #SBATCH --mail-user=your.email@wur.nl

    # Load your software/command
    module load apptainer/1.5.2

    # Run your command
    GTDBTK_DATA_PATH="/work/databases/gtdb/release_232"
    CONTAINER=/tools/containers/gtdbtk_272.sif

    apptainer run \
      --bind /work/${USER}:/data \
      --bind ${GTDBTK_DATA_PATH}:/refdata \
      ${CONTAINER} \
      classify_wf --genome_dir /data/genomes --out_dir /data/output