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| Whatever you read here may need some adjustment to fit your specific case. Do not hesitate to ask for some help. |
Whatever you read here may need to be adjusted to fit your specific case. Do not hesitate to ask for some help wen needed. == Partition == Some but not all partitions are available to the compute nodes. Compute nodes will not be able to access any data from filesystems that are not listed here. /work /scratch /home/ |
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| spades.py | CMD [OPTIONS] ARGUMENTS |
Contents
Submitting jobs
Whatever you read here may need to be adjusted to fit your specific case. Do not hesitate to ask for some help wen needed.
Partition
Some but not all partitions are available to the compute nodes. Compute nodes will not be able to access any data from filesystems that are not listed here. /work /scratch /home/
Example of batch script
1 #!/bin/bash
2
3 #SBATCH -J test # Job name
4 #SBATCH -o /work/<<UID>>/job.%j.out # Name of stdout output file (%j expands to jobId)
5 #SBATCH -N 1 # Total number of nodes requested
6 #SBATCH -n 16 # Total number of mpi tasks requested
7 #SBATCH -t 01:30:00 # Run time (hh:mm:ss) - 1.5 hours
8
9 # Load your software/command
10 module load CMD
11
12 # Run your command
13 CMD [OPTIONS] ARGUMENTS