92023-04-25 11:29:10fhoma82023-04-25 09:53:34fhoma72021-10-29 14:53:06fhoma62021-10-29 14:35:56fhoma52021-10-29 14:34:16fhoma42021-10-29 09:34:36fhoma32020-11-02 14:37:03fhomaAdding formated sqeue example22020-09-24 16:46:59fhoma12020-05-13 20:56:35fhomaMonitor jobs

We assume that you have submitted jobs that are currently running. The idea now is to know the status of your jobs.

If you have used the options --mail-user & --mail-type, you should get email notification when your job reaches a specific status. When --mail-type is set to ALL you will be notified for every status of your job. Here are the possible values for --mail-type, BEGINWhen job is allocated ENDWhen job is done FAILWhen job has fail REQUEUEWhen a fail or finished job is put back into the queue STAGE_OUTBurst buffer stage out and teardown completed TIME_LIMITWhen job has reached 100% of time limit TIME_LIMIT_90When job has reached 90% of time limit TIME_LIMIT_80When job has reached 80% of time limit TIME_LIMIT_50When job has reached 50% of time limit ARRAY_TASKSSend emails for each array task ALLBEGIN, END, FAIL, REQUEUE, STAGE_OUT Have a look at the help of the command SBATCH to know more about notifications.

Check the status of the queue using. >]]> >]]>

Cancel a pending or running job or job step. It can also be used to send an arbitrary signal to all processes associated with a running job or job step. >]]>

Prints information about the resources utilized by a running job or job step. >]]>

Reports job or job step accounting information about active or completed jobs. >]]> >]]> >]]>

Use the command sinfo to report the state of partitions and nodes.

Computers description Request an account storage description First login Receiving sequencing data transferring data Submitting jobs Monitor jobs Install tools Space management #top